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Commits on Mar 7, 2017

• Update README.md

  mohamadi

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Commits on Apr 24, 2015

• add Common/FileUtil.h to list of source files

  

  Ben Vandervalk

  committed
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• bump version to 1.0.1 in preparation for release

  

  Ben Vandervalk

  committed
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• use autotools VERSION variable in code

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  Ben Vandervalk

  committed
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Commits on Apr 22, 2015

• gzstream: add missing Makefile.am

  

  Ben Vandervalk

  committed
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• README.md: add acknowledgement for gzstream library (LGPL license)

  

  Ben Vandervalk

  committed
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• dida-wrapper: fix filename mismatch with lreads.sam file

  

  Ben Vandervalk

  committed
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• run-tests.mk: add missing files to 'clean' target

  

  Ben Vandervalk

  committed
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• dida-wrapper: fix my error with temp SAM filename

  

  Ben Vandervalk

  committed
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• dida-wrapper: fix my error in aligner shell commands

  

  Ben Vandervalk

  committed
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• mrg.cpp: remove file seek operations (to support gzipped streams)

  

  Ben Vandervalk

  committed
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• mrg.cpp: fix error in SAM filename

  

  Ben Vandervalk

  committed
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• dida_wrapper: code to gzip intermediate read and SAM files (currently disabled due to multipass merge routine)

  

  Ben Vandervalk

  committed
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• gzstream: check for libz, link dida_wrapper with libz and gzstream if present

  

  Ben Vandervalk

  committed
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• gzstream: include authors' original Makefile

  

  Ben Vandervalk

  committed
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• add files for gzstream library

  

  Ben Vandervalk

  committed
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Commits on Mar 1, 2015

• formatted all source codes

  mohamadi

  committed
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Commits on Feb 28, 2015

• dida-wrapper: fix the issue of opt::threads > opt::pnum

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  mohamadi

  committed
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Commits on Feb 25, 2015

• dida-wrapper: don't permit opt::threads > opt::pnum

  

  Ben Vandervalk

  committed
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Commits on Feb 3, 2015

• dida-wrapper: fix crash when read length < opt::bmer (caused by implicit conversion of negative int to unsigned)

  

  Ben Vandervalk

  committed
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• dida-wrapper: check for errors when opening files

  

  Ben Vandervalk

  committed
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• dida-wrapper: report hostname of each rank at startup

  

  Ben Vandervalk

  committed
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Commits on Jan 30, 2015

• README.md: add compatibility notes for mpich/openmpi

  

  Ben Vandervalk

  committed
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• test/run-tests.mk: use abyss-map -j option

  

  Ben Vandervalk

  committed
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Commits on Jan 28, 2015

• dida-mpi abyss-map MAPQ == 0, DIDA MAPQ != 0 issue resolved

  mohamadi

  committed
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• abyss-map MAPQ == 0, DIDA MAPQ != 0 issue

  mohamadi

  committed
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• test/run-tests.mk: add wrapper_opt param

  

  Ben Vandervalk

  committed
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• test/run-tests.mk: add wrapper_stream_test to default targets

  

  Ben Vandervalk

  committed
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• test/run-tests.mk: fix unreliable download commands (curl)

  

  Ben Vandervalk

  committed
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• dida-wrapper: add --no-clean opt, add -l opt to help output

  

  Ben Vandervalk

  committed
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Commits on Jan 27, 2015

• dida-wrapper: set default number of threads to 1 (not 0)

  

  Ben Vandervalk

  committed
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Commits on Jan 26, 2015

• dida_wrapper.cpp: use number of threads specified by -j (and no more)

  

  Ben Vandervalk

  committed
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• Common/prt.cpp: output SAM headers to STDOUT instead of aln.sam

  

  Ben Vandervalk

  committed
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• README.md: use same shebang line across examples

  

  Ben Vandervalk

  committed
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• README.md: apply markdown formatting to text

  

  Ben Vandervalk

  committed
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