Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on Mar 7, 2023

• Update eaf_name parameter description

  JonJala

  authored
  9e17f3c

  Copy full SHA for 9e17f3c

Commits on Sep 26, 2022

• Add median Z cutoff parameter to munge

  Show description for 29285a6
  JonJala

  authored
  29285a6

  Copy full SHA for 29285a6

Commits on Aug 31, 2022

• Fix usage docs (beta_name and se_name errors)

  Show description for 28036a4
  JonJala

  authored
  28036a4

  Copy full SHA for 28036a4

Commits on Aug 17, 2022

• Use Dataframe.to_string() vs. str() for summary

  Show description for fcdd2f7
  JonJala

  authored
  fcdd2f7

  Copy full SHA for fcdd2f7

Commits on Dec 13, 2021

• Update software correspondence email

  

  Jonathan Jala

  committed
  018d455

  Copy full SHA for 018d455

Commits on Dec 2, 2021

• Temporarily disable use_beta_se flag

  Show description for 6841103
  

  Jonathan Jala

  committed
  6841103

  Copy full SHA for 6841103

Commits on Nov 30, 2021

• Add warning when using non-default median Z threshold

  

  Jonathan Jala

  committed
  84be027

  Copy full SHA for 84be027

• Merge pull request #146 from baris-insitro/add-median-z-option

  Show description for a86602f
  JonJala

  authored
  a86602f

  Copy full SHA for a86602f

Commits on Nov 24, 2021

• allow median Z-score QC cutoff to be user-specified

  baris-insitro

  committed
  00222e3

  Copy full SHA for 00222e3

Commits on Aug 20, 2020

• Fix typo

  Show description for 07d2583
  JonJala

  authored
  07d2583

  Copy full SHA for 07d2583

Commits on Aug 14, 2020

• MAF Filter to use <=0 and >=1 as conditions

  Show description for 1fbe6aa
  JonJala

  authored
  1fbe6aa

  Copy full SHA for 1fbe6aa

Commits on Jul 27, 2020

• Repo cleanup / minor adjustments for convenience

  Show description for 841edf1
  

  Jonathan Jala

  committed
  841edf1

  Copy full SHA for 841edf1

Commits on Apr 17, 2019

• fix duplicate axis problem

  Show description for 7d7a746
  

  huilisabrina

  committed
  7d7a746

  Copy full SHA for 7d7a746

Commits on Mar 19, 2019

• Fix bug in meta_format

  Show description for 070d39c
  

  huilisabrina

  committed
  070d39c

  Copy full SHA for 070d39c

Commits on Dec 3, 2018

• Fix --no_chr_data

  

  huilisabrina

  committed
  4fbcbc0

  Copy full SHA for 4fbcbc0

Commits on Nov 25, 2018

• Resolve backward inconsistency

  Show description for af7810e
  

  huilisabrina

  committed
  af7810e

  Copy full SHA for af7810e

• Multiple enhancements

  Show description for 284241a
  

  huilisabrina

  committed
  284241a

  Copy full SHA for 284241a

• Unpacking the args

  

  huilisabrina

  committed
  88c07af

  Copy full SHA for 88c07af

• Retain N_raw in summary and output sumstats

  

  huilisabrina

  committed
  27639cf

  Copy full SHA for 27639cf

• Fix ambig filtering

  

  huilisabrina

  committed
  dfd4958

  Copy full SHA for dfd4958

Commits on Nov 20, 2018

• Merge pull request #49 from carbocation/feature/add-environment

  Show description for a95fcc2
  huilisabrina

  authored
  a95fcc2

  Copy full SHA for a95fcc2

• Capture inconsistent filter flags and data

  Show description for f81f331
  

  huilisabrina

  committed
  f81f331

  Copy full SHA for f81f331

• Adds the environment.yml file that will permit you to run mtag more

  Show description for e0181d8
  carbocation

  committed
  e0181d8

  Copy full SHA for e0181d8

Commits on Oct 31, 2018

• Update anaconda download link

  huilisabrina

  authored
  acd5dae

  Copy full SHA for acd5dae

Commits on Oct 29, 2018

• fix beta_munge

  

  huilisabrina

  committed
  36b6bc9

  Copy full SHA for 36b6bc9

Commits on Oct 26, 2018

• Fixes for column converter

  

  huilisabrina

  committed
  7d00271

  Copy full SHA for 7d00271

Commits on Oct 17, 2018

• Add "args.use_beta_se"

  Show description for 86dfc4c
  

  huilisabrina

  committed
  86dfc4c

  Copy full SHA for 86dfc4c

Commits on Oct 16, 2018

• Update beta/se default names

  

  huilisabrina

  committed
  11c8596

  Copy full SHA for 11c8596

Commits on Sep 13, 2018

• SNP column in meta-format mode

  Show description for 4f87e55
  huilisabrina

  authored
  4f87e55

  Copy full SHA for 4f87e55

• Fix FRQ requirement in munging

  

  huilisabrina

  committed
  09299e0

  Copy full SHA for 09299e0

• Remove SE requirement in munging

  

  huilisabrina

  committed
  abfdcce

  Copy full SHA for abfdcce

Commits on Aug 24, 2018

• Merge pull request #41 from omeed-maghzian/update_batch2

  Show description for a532fe3
  huilisabrina

  authored
  a532fe3

  Copy full SHA for a532fe3

Commits on Aug 22, 2018

• update_batch2

  Show description for 3b1dc8f
  

  huilisabrina

  committed
  3b1dc8f

  Copy full SHA for 3b1dc8f

• Add --force

  Show description for 5fd3ed3
  huilisabrina

  authored
  5fd3ed3

  Copy full SHA for 5fd3ed3

Commits on Jul 23, 2018

• Merge pull request #36 from omeed-maghzian/update_patch1

  Show description for 89e278c
  huilisabrina

  authored
  89e278c

  Copy full SHA for 89e278c