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daddad
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working on getting papers to display
1 parent 05a08b3 commit 3e85ee4

16 files changed

Lines changed: 162 additions & 29 deletions

‎_includes/themes/lab/paper.html‎

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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div class="bigspacer"></div>
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<div class="row">
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<div class="col-md-3">
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<div class="bigspacer"></div>
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<div class="glyphbox note">
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{% if page.pdf %}
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<div class="glyphbox note"> <!-- DAD: what is this class? -->
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{% if page.pdf %}
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<div class="smallhead">
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PDF
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</div>
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<div class="pad-left note">
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<div class="smallspacer"></div>
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<i class="fa fa-file-text-o fa-fw"></i>
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<a class="off" href="{{ page.pdf }}">{{ page.pdf | split: '/' | last }}</a>
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</div>
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<div class="bigspacer"></div>
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{% endif %}
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</div>
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<div class="bigspacer"></div>
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{% endif %}
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{% if page.supplement %}
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<div class="smallhead">
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Supplement
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<div class="smallspacer"></div>
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<i class="fa fa-paperclip fa-fw"></i>
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<a class="off" href="{{ page.supplement }}">{{ page.supplement | split: '/' | last }}</a>
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</div>
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<div class="bigspacer"></div>
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</div>
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<div class="bigspacer"></div>
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{% endif %}
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{% if page.doi %}
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<div class="smallhead">
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DOI
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</div>
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</div>
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<div class="pad-left note">
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<div class="smallspacer"></div>
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<i class="fa fa-external-link fa-fw"></i>
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<a class="off" href="http://dx.doi.org/{{ page.doi }}">{{ page.doi }}</a>
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</div>
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<div class="bigspacer"></div>
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{% endif %}
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</div>
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<div class="bigspacer"></div>
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{% endif %}
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{% if page.github %}
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<div class="smallhead">
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Source code
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<div class="smallspacer"></div>
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<i class="fa fa-cog fa-fw"></i>
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<a class="off" href="{{ page.github }}">{{ page.github | remove: 'http://' | remove: 'https://' }}</a>
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</div>
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<div class="bigspacer"></div>
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</div>
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<div class="bigspacer"></div>
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{% endif %}
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<div class="smallhead">
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Share
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</div>
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</div>
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<div class="pad-left note">
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<div class="smallspacer"></div>
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{% tweet {{page.url}} {{page.title}} %}
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{% trackback {{page.url}} %}
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</div>
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{% trackback {{page.url}} %}
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</div>
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</div>
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</div>
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<div class="col-md-8">
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<div class="post">
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{{ content }}
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</div>
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</div>
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<div class="col-md-1"></div>
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</div>
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<div class="col-md-1"></div>
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</div>

‎_layouts/default.html‎

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---
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theme :
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name : bootstrap-3
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name : lab
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---
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{% include JB/setup %}
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{% include themes/lab/default.html %}

‎_layouts/page.html‎

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---
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theme :
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name : bootstrap-3
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name : lab
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layout: default
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---
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{% include JB/setup %}

‎_layouts/post.html‎

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---
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theme :
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name : bootstrap-3
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name : lab
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layout: default
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---
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{% include JB/setup %}

‎_layouts/protocol.html‎

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---
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theme :
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name : bootstrap-3
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name : lab
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layout: default
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---
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{% include JB/setup %}

‎_plugins/trackback.rb‎

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# Author: Trevor Bedford
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# License: MIT
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# Examples:
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# {% trackback url %}
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# {% trackback {{page.url}} %}
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require 'json'
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require 'open-uri'
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module Jekyll
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class Trackback < Liquid::Tag
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def initialize(tag_name, markup, tokens)
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super
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@markup = "#{markup}".strip
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end
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def render(context)
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url = Liquid::Template.parse(@markup).render context
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if url =~ /^\//
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url = "http://drummondlab.github.io" + url
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end
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json_object = JSON.parse(open("http://urls.api.twitter.com/1/urls/count.json?url=#{url}").read)
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count = json_object["count"]
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topsy_url = url.gsub(/:/, '%3A').gsub(/\//, '%2F')
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html = ""
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if count > 0
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html += "<span class=\"smallnote\">"
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html += "<i class=\"fa fa-angle-left\"></i> "
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html += "<a class=\"off\" href=\"http://topsy.com/trackback?url=#{topsy_url}\">"
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html += "#{count}"
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html += "</a>"
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html += "</span>"
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end
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html
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end
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end
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end
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Liquid::Template.register_tag('trackback', Jekyll::Trackback)

‎_plugins/tweet.rb‎

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# Author: Trevor Bedford
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# License: MIT
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# Examples:
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# {% tweet url description %}
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# {% tweet {{page.url}} {{page.title}} %}
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module Jekyll
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class Tweet < Liquid::Tag
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def initialize(tag_name, markup, tokens)
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super
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@markup = "#{markup}".strip
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end
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def render(context)
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parsed = Liquid::Template.parse(@markup).render context
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url = parsed.split(/ /).first
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if url =~ /^\//
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url = "http://drummondlab.github.io" + url
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end
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text = parsed.split(/ /).drop(1).join(' ')
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html = ""
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url.gsub!(/ /, '%20')
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text.gsub!(/ /, '%20')
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html += "<i class=\"fa fa-twitter fa-fw\"></i> "
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html += "<a class=\"off\" href=\"http://twitter.com/share?url=#{url}&text=#{text}\" target=\"_blank\">"
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html += "tweet"
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html += "</a>"
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html
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end
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end
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end
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Liquid::Template.register_tag('tweet', Jekyll::Tweet)

‎archive.html‎

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layout: page
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title : Archive
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header : Post Archive
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group: navigation
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group:
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---
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{% include JB/setup %}
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‎blog/_posts/2015-04-18-about.md‎

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---
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layout: post
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title: "About"
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description: ""
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category: misc
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tags: []
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---
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{% include JB/setup %}

‎blog/_posts/2015-04-18-another-one.md‎

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---
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layout: post
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title: "another one"
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description: ""
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category:
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tags: []
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---
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{% include JB/setup %}

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