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Commits on Apr 7, 2026

• WIP remove MetabrefInterface for getting lipid library and replace with downloadable ms2 spectral library

  kheal

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  e661d0b

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Commits on Jan 15, 2026

• Update file module paths in examples

  kheal

  committed
  638570b

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• Remove and reorganize support_code

  kheal

  committed
  8bf1ecd

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• Clean up, remove, document nmdc-related scripts

  kheal

  committed
  a35b014

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• Clean up, remove, document nmdc-related scripts

  kheal

  committed
  f95a315

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Commits on Oct 3, 2025

• Update tests and support workflow code

  kheal

  committed
  8a4428a

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• Rearrange lipidomics workflow and add helper function for optimizing filtering parameters

  kheal

  committed
  b65f471

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Commits on May 19, 2025

• Remove remaining todos and convert to fixme for #215

  kheal

  committed
  ec2eec3

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Commits on May 13, 2025

• Improve docstring for LiquidChromatographSetting

  kheal

  committed
  04a5ffe

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• Add method for centroided peak picking

  kheal

  committed
  467d702

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• Refactor roll up for already centroided data

  kheal

  committed
  adf90e9

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Commits on May 12, 2025

• Clean up lcms worklfow exporter and example in preparation for test

  kheal

  committed
  1570a72

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• WIP fix exporter for lcms metabolomics

  kheal

  committed
  9d906bf

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Commits on May 7, 2025

• Adjust lcms_metab workflow

  kheal

  committed
  6c6f1a5

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Commits on Apr 30, 2025

• Start refactoring mass spectra export to make LCMSMetabolomics export class

  kheal

  committed
  6ac0c25

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Commits on Apr 22, 2025

• Small fixes to database interface and associated metadata to deal with broken tests and different names of fields in msp

  kheal

  committed
  f011b7c

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• Fix dataframe formatter and separate from initial reading of msp

  kheal

  committed
  2c599df

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• Lint scripts

  kheal

  committed
  34cac51

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• Add functionality for generating spectral search library and associated molecular metadata

  kheal

  committed
  4b00275

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Commits on Apr 21, 2025

• Add starter script for lcms metabolomics workflow development

  kheal

  committed
  bbaae35

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Commits on Jan 15, 2025

• Remove using header from MetabRef queries

  kheal

  committed
  4e1a4ff

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Commits on Jan 8, 2025

• add metabolomics skelton functionality

  

  brynnz22

  committed
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Commits on Dec 18, 2024

• Add option for deleting the database for a SearcholecularFormulasLC search

  kheal

  committed
  ebfcab1

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Commits on Dec 17, 2024

• Add functionality for bulk molecular formula search

  kheal

  committed
  6851bc6

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• Merge branch 'master' into 182_precursor_request_patch

  kheal

  committed
  d3d0eaa

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• Modify lipid workflow to use bulk molecular formula search

  kheal

  committed
  24317c4

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• Merge branch 'verbosity_fixes_dec2024' into 'master'

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  corilo

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Commits on Dec 11, 2024

• update documentation for config on generator

  

  brynnz22

  committed
  86aac16

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• update config name in toml file

  

  brynnz22

  committed
  7877953

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• Add line for changing verbose output for formula searching to lipid workflow

  kheal

  committed
  4572cb6

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Commits on Dec 10, 2024

• add envo term api capabiliites and doct strings

  

  brynnz22

  committed
  a5d5d55

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• clean up run statement, fix biosample generation for failed rows

  

  brynnz22

  committed
  debd353

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Commits on Dec 2, 2024

• add config checker and make example csv smaller

  

  brynnz22

  committed
  55772cf

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• make API message clearer

  

  brynnz22

  committed
  59146aa

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• add failed rows json and tqdm functionality

  

  brynnz22

  committed
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