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https://www.sc-best-practices.org

Jupyter Notebook 1,195 269 Updated May 15, 2026

This repository contains scNotebooks, a collection of interactive Jupyter and Google Colab notebooks designed to teach and practice single‑cell and spatial transcriptomics. The notebooks guide lear…

Jupyter Notebook 94 24 Updated May 12, 2026

Language Savant. If your repository's language is being reported incorrectly, send us a pull request!

Ruby 13,469 5,168 Updated May 15, 2026

Basics of the OSCA book

TeX 15 15 Updated Sep 29, 2025

Learn it. Build it. Ship it for others.

Python 7,786 1,615 Updated May 14, 2026

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

Python 22,850 2,463 Updated May 11, 2026

AI writes code. This automates everything else Β· 20 plugins Β· 49 agents Β· 41 skills Β· for Claude Code, OpenCode, Codex, Cursor, Kiro.

JavaScript 803 89 Updated Apr 26, 2026

The open source coding agent.

TypeScript 161,088 18,914 Updated May 16, 2026

A powerful AI coding agent. Built for the terminal.

Go 12,568 1,370 Updated Sep 18, 2025

Use Claude Code as the foundation for coding infrastructure, allowing you to decide how to interact with the model while enjoying updates from Anthropic.

TypeScript 34,047 2,772 Updated Mar 4, 2026

An orchestration platform for the development, production, and observation of data assets.

Python 15,519 2,125 Updated May 15, 2026

RNA-seq aligner

C 2,196 546 Updated Mar 18, 2025

Master programming by recreating your favorite technologies from scratch.

Markdown 501,770 47,586 Updated Feb 21, 2026

AI Dev Tools Zoomcamp is a free course that helps you use AI tools to write better code, faster. We're starting the first cohort of this course on November 18, 2025! Sign up here to join us πŸ‘‡πŸΌ

JavaScript 1,095 181 Updated Mar 9, 2026

Data Engineering Zoomcamp is a free 9-week course on building production-ready data pipelines. The next cohort starts in January 2026. Join the course here πŸ‘‡πŸΌ

Jupyter Notebook 40,892 8,167 Updated May 3, 2026

An Open Source Python alternative to NotebookLM's podcast feature: Transforming Multimodal Content into Captivating Multilingual Audio Conversations with GenAI

Python 6,290 730 Updated May 4, 2026

A basic LAMP stack environment built using Docker Compose.

Dockerfile 2,843 1,471 Updated Apr 3, 2026

Notebooks for the third edition of Think Stats

Jupyter Notebook 928 154 Updated Feb 13, 2026

Source code and related materials for the O'Reilly book

Jupyter Notebook 101 25 Updated Jul 28, 2022

Snakemake workshop

Python 1 Updated Dec 10, 2025

Workshop to teach how to run nextflow pipelines

Nextflow 1 Updated Dec 10, 2025

Introduction to Snakemake for Bioinformatics

Python 22 10 Updated May 12, 2026

An experimental AI agent workflow.

Python 16 5 Updated Oct 11, 2025

Refresher training course on the foundations of statistical analysis. http://tinyurl.com/cruk-stats

HTML 43 18 Updated Oct 23, 2025

250+ Fine-tuning & RL Notebooks for text, vision, audio, embedding, TTS models.

Jupyter Notebook 5,364 874 Updated May 16, 2026

TRAjectory-based Differential Expression analysis for SEQuencing data

HTML 295 36 Updated Jun 17, 2025

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

63 6 Updated May 11, 2026

Agent that summarises literature and answers academic questions using the arXiv API

Python 22 5 Updated Jan 31, 2026
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