Merge pull request #307 from OpenFreeEnergy/openfold_nb_updates

update data and reorg openfold->openfe notebook

Merge pull request #306 from OpenFreeEnergy/update_septop_data

updating septop analysis notebook for new results structure

Merge pull request #284 from OpenFreeEnergy/cofactors_cookbook

add cofactor example as a cookbook

Merge pull request #268 from OpenFreeEnergy/fix/notebook_tests

fix failing cells in example notebooks

Merge pull request #255 from OpenFreeEnergy/remove_abfe_results

Remove abfe results as they are breaking things otherwise

updates to t4lysozyme rbfe example (#246)

* bump rc releases to v1.7.0

* bump CI to use python 3.12

* update README

* bump binder env version for testing

* updates to t4lysozyme rbfe example

CI autocomment should use colab, not binder (#232)

Adding details about --n-protocol-repeats to CLI tutorial (#213)

* Start adding details about --n-protocol-repeats

* Update rbfe_tutorial/cli_tutorial.md

* Apply suggestions from code review

* update result tree

* update language

* updating output example

* =1 -> 1

---------

Co-authored-by: Alyssa Travitz <31974495+atravitz@users.noreply.github.com>
Co-authored-by: Alyssa Travitz <alyssa.travitz@omsf.io>

Merge pull request #203 from OpenFreeEnergy/abfe-tutorial

Add an ABFE tutorial

update links in readme