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write and test function for gvcf to fasta conversion#53

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aberthel merged 2 commits into
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gvcf-to-fasta
Sep 24, 2025
Merged

write and test function for gvcf to fasta conversion#53
aberthel merged 2 commits into
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gvcf-to-fasta

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Standalone function added to VCFUtils modifies a reference sequence with variants from the provided GVCF file, and writes the resulting sequence to a new fasta file.

@aberthel aberthel requested review from btmonier and zrm22 September 23, 2025 16:02
@aberthel aberthel self-assigned this Sep 23, 2025
} else {
writer.write("\n>$chrom\n")
}
println(chrom)
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If you want this to be left in, consider using a logger and making it a full sentence.

@aberthel aberthel merged commit aa63923 into master Sep 24, 2025
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3 participants