PLINK reader for Python.

The IKMB GWAS Association Testing Pipeline

Automated Tool for Global Screening Array analysis

Automate repetitive Putty/SSH tasks, a free alternative to Ansible

Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).

Perform liftover on plink files

population structural variant calling with smoove

Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.

Map SNP positions to a supplied reference assembly using BLAST. Filter results for best hit. Output in plink format.

🧬 A suite of Python CLI utilities for bioinformatics: automated PGS to PLINK conversion, genome build liftovers (hg19/hg38), and VCF data processing

Automated pipeline for Genome - Wide Association Studies (GWAS) in Saccharomyces cerevisiae. Part of my Master's Thesis (TFM)

MCP server exposing the full PuTTY toolchain — 30 tools for SSH, SCP, SFTP, serial, key management, registry sessions, and multi-hop

Python library to work with PLINK files.

Automated APOE genotype calling from PLINK .ped files with phenotype-stratified summary statistics, supporting rare e1 allele detection and Slurm HPC batch execution

Fast and minimal PLINK file processing with numba