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xenium

Here are 4 public repositories matching this topic...

camlab-bioml / rakaia

Spatial omics in the browser for hundreds of images at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/

browser viewer spatial spatial-analysis spatial-data omics spatial-proteomics mcd histology spatial-transcriptomics zarr visium multiplexed-imaging imaging-mass-cytometry spatial-omics xenium spatial-biology

Updated May 8, 2026
Python

MultiQC / xenium-extra

Additional MultiQC report sections for 10x Genomics Xenium data.

multiqc single-cell 10xgenomics multiqc-plugin xenium

Updated Dec 18, 2025
Python

hutaobo / sfplot

Spatial structure analysis and Search-and-Find plot generation for spatial omics data

python bioinformatics data-visualization spatial-analysis single-cell spatial-transcriptomics scanpy visium spatial-omics xenium

Updated May 3, 2026
Python

hutaobo / HistoSeg

Python toolkit for H&E image analysis and spatial contour analysis.

python geojson readthedocs segmentation histology digital-pathology contour-analysis spatial-transcriptomics xenium h-and-e

Updated May 8, 2026
Python

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