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Comment: Re: raw intensities in affymetrix .cel files by Aswet β€’ 0
The passage highlights that the Statistical Algorithms used in GeneChip analysis rely on data already present in the .CEL files, which are …
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I have edited my answer above now to explain how to average technical replicates.
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edgeR provides the function `cpmByGroup()` to compute mean expression per group, and the recommended way to get logCPM by group is to run t…
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Answer: Removing peptides with missing values across all samples in limpa greatly influe
Removing peptides with missing values across all samples in limpa greatly influences protein summarization
Answer: edgeR: Clustering for heatmap on the means of group instead of replicates
edgeR: Clustering for heatmap on the means of group instead of replicates
Answer: limpa for protein quantification & differential expression analysis: Accounting
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